e-Lynx - May 2009

Dear Researcher,

We are pleased to present the May e-Lynx, a newsletter devoted to keeping our customers up-to -date on new technologies, our new products, suppliers, activities and promotions.

New Products

Macherey-Nagel - NucleoSpin® TriPrep
Parallel isolation of DNA, RNA and proteins from undivided samples.

This kit gives three results from one sample and allows the determination of gene expression profiles from a large variety of sample materials, covering cultured cells, tissue, bacteria, yeast, and plants.

  • Convenient one-column preparation of RNA, DNA, and protein
  • High quality RNA and DNA, ready-to-use for downstream applications
  • High protein yield independent of protein size, localization, modification, etc.
  • Complete kit, includes: NucleoSpin Filters (shredders) for optimal lysis, rDNase for on-column DNA digestion and Protein Solving Buffer for solving all types of proteins

Image: NucleoSpin® TriPrep Procedure
Click for larger image

Click here to view the NucleoSpin® TriPrep Manual.

Product Number
Description
Pkg Size

MCN74096610

NucleoSpin® TriPrep

10 Prep
MCN74096650 NucleoSpin® TriPrep 50 Prep
MCN740966250 NucleoSpin® TriPrep 250 Prep

Platypus Technologies - Oris™ Cell Migration Assembly Kit - FLEX
More convenient for partial 96-well plate experiments.

The Oris™ Cell Migration Assay is designed with a unique cell seeding stopper, detection mask, and stopper tool. This unique plate design generates highly reproducible results using a microscope, digital imaging system or fluorescence plate reader. Simply adhere the seeded cells in each well, remove the stopper to create a detection zone, and measure the migration.

The NEW Oris™ Cell Migration Assembly Kit-FLEX now allows for more control over how many tests can be performed in a single experiment.

  • Flexible Evaluation - Use anywhere from 4 to 96 test wells per experiment; it is your choice.
  • More Data Per Well- Analyze cells using multiple fluorescent probes, labels or stains by using a microplate reader, microscope or high content imaging system.
  • Creative Assay Design- Coat any ECM or BME on the plate to create a 2-D or 3-D environment for cell migration or cell invasion assays.
  • Reproducible Results- Achieve lower well-to-well CV's with the unique Oris™ assay design than with scratch assays.
  • Real-time Monitoring- Track changes in cell movement and morphology as cell migration or invasion progresses.
  • HTS and HCS Compatibility- Observe cells directly without interference from cell culture inserts or transmembrane devices.

Whether you are studying cancer metastasis or wound healing, the Oris™ Cell Migration Assembly Kit-FLEX adapts to your unique experimental design. Click here for more product details.

Product Number
Description
Pkg Size

PPCMAUFL4

Oris™ Cell Migration Assembly Kit - Flex
Includes: Oris™-compatible, 96-well, Tissue Culture Treated Plates (black, clear bottom), 4
Oris™ Cell Seeding Stoppers, 4 packs of 24*
Oris™ Detection Mask, 1
Oris™ Stopper Tool, 1
* sufficient materials for 96 tests

Kit

Active Motif - UnMethylCollector™ Kit
Novel technology to isolate hypomethylated CpG islands

The UnMethylCollector™ Kit* is the first commercially available kit for the specific isolation of hypomethylated CpG islands. The kit utilizes the CXXC domain from mouse Mbd1, which is able to specifically bind unmethylated CpG dinucleotides from as little as 1600 cells (~10 ng DNA).

  • Fast magnetic protocol completed in less than 3 hours
  • Optimized reagents and protocol ensure successful capture from as few as one unmethylated CpG dinucleotide per fragment
  • Provides DNA suitable for use in many downstream applications, such as real time or endpoint PCR analysis of the methylation status of particular loci, sequencing, or amplification and labeling for microarray analysis.

Click here to view the UnMethylCollector™ manual.

Product Number
Description
Pkg Size

AM55004

UnMethylCollector™

30 rxns

* Patent Pending

Active Motif - MethylCollector™ Ultra
Methylation analysis from as few as 200 cells

MethylCollector™ Ultra* is an improved technology for the enrichment of CpG-methylated DNA. The kit combines the His-tagged MBD2b protein with its binding partner MBD3L1 to generate higher affinity and better specificity for CpG-methylated DNA than other methyl-binding protein or antibody immunoprecipitation methods.

  • High affinity binding provides greater enrichment than other MBD capture or antibody-based immunoprecipitation methods
  • Specifically detects methylated CpGs from 1 ng - 1 µg of DNA fragmented by sonication or enzymatic digestion
  • No need to denature DNA; simple protocol completed in less than 3 hours

Click here to view the MethylCollector™ Ultra manual

Product Number
Description
Pkg Size

AM55005

MethylCollector™ Ultra

30 rxns

* Technology is covered under U.S. Patent No. 7.425.415


Labnet - Revolver 360° Sample Mixer

Labnet's Revolver accepts a variety of tube sizes and mixes them horizontally, vertically, or any position in between. Changing the mixing angle is easy! simply turn the rotisserie. No tools are required.

  • Complete 360° rotation
  • Adjustable 0-90° mixing angle
  • Interchangeable rotisserie options for all common lab tubes.
  • Independently adjustable rotisseries
  • Cold room and incubator compatible
Product Number
Description
Pkg Size

LNH5600

Revolver Tube Mixer (with rotisserie for 36 x 1.5mL tubes), 120V

Each
LNH560015 Rotisserie for 10 x 15 mL tubes & 12 x 5/7 mL tubes Each
LNH560050 Rotisserie for 6 x 50 mL tubes Each

Simport - EconoTube™

  • 1.5 mL tube, made of Polypropylene
  • Economically priced
  • Specially designed to reduce popping during centrifugation, freezing, storing or shipping
  • Reinforced bottom for added protection against leakage
  • Can be used for centrifugation up to 20,000g

For pricing information, contact our Customer Service Team at 1-888-593-5969 or sales@biolynx.ca.

Product Number
Description
Pkg Size

SPT330N5

EconoTube™, 1.5 mL, PP

5000

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New Literature

Active Motif - Transcription Biology Brochure

This new brochure features transcription factor and nuclear receptor ELISAs, chromatin assays and IP kits, luciferase assays, supershift & gelshift assays.
Click here for the on-line PDF.
Contact our Technical Support Team
to request printed copies.

Associates of Cape Cod Inc. - LAL Update, April 2009

In this issue: Controls for Photometric Tests: Implications for Low Capacity Test Systems
by Robert Porzio and Michael Dawson, Ph.D., RAC.
Click here for the on-line PDF.

 

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Promotions

Meridian Life Sciences - Free Pilot Runs for Antibody Production

Meridian Life Science, Inc. (MLS) is offering a limited number of Free Pilot Runs of ascites production of monoclonal antibodies. This time sensitive promotion is for qualified companies who have needs for bulk production.

  • Small pilot lots are offered to optimize production yields
  • Significant cost saving over cell culture method or even in-house production methods
  • Lot-to-lot yield and quality is highly consistent
  • Antibody concentration in ascites is determined on each lot by electrophoresis
  • Quick turnaround is achieved by maintaining a ready supply of BALB/c and CAF1 mouse colonies
  • Purification can be performed to customer specifications

Please contact our Technical Support Team to inquire.

Abgent - Free Chocolate with the Purchase of Antibodies

From April 1st to June 30th, 2009
Accumulate purchases of 5 Abgent antibodies* and receive a $50 gift card for Laura Secord Chocolates.

Abgent antibodies are widely used in the fields of :

  • Autophagy
  • Apoptosis
  • Cell Function
  • Gene Regulation
  • Stem Cells
  • Phosphorylation

Click here for details.
* Offer is not applicable to Abgent Antibody Sampler Kits.

Gentel Biotechnologies - Receive a Free SIMplex™ 16 Multi-Array System when you purchase an APiX™ Cancer Biomarker Array Kit.

Measure the relative abundance of 46 human cancer-related proteins
with the single-capture antibody array.

  • Reliable profiling data of 46 cancer proteins per serum sample
  • A complete kit with a pre-printed array and labeling reagents
  • Compatibility with standard microarray scanners

Use the arrays with the SIMplex™ 16 Multi-Array System for:

  • Leak-proof microarray separation
  • Increase throughput to process 16 samples simultaneously
  • Compatibility with multi-channel pipettors

Click here for promotion details.
Offer valid from April 1st to May 29th, 2009

Active Motif - Order ChIP-IT™ Express HT and Receive a FREE MAG-96 Magnetic Stand

ChIP-IT™ Express HT allows you to perform chromatin IP in a fast, reproducible high-throughput format. It combines the efficiency of the groundbreaking magnetic bead-based ChIP-IT™ Express Kit with a 96-well plate format, enabling the rapid and efficient processing of a large number of ChIP reactions.

This offer is available while quantities last
Click here for promotion details

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Technical Report

Heat Shock Protein 90 (Hsp90)
by Dr. Ariel Lowrier, StressMarq Biosciences Inc.

Hsp90 is one of a number of classes of heat shock proteins (Hsps), which are generally synthesized in response to cellular stress as well as being constitutively expressed in some cases. These types of stress are numerous, but include heat shock, metal toxicity, nutrient deprivation, oxidative stress as well as numerous disease states of which cancer has received the most attention. Hsps function is several ways, but have the ability to form complexes with client proteins and act as molecular chaperones. These complexes are themselves directly involved in protein folding in the cytosol, endoplasmic reticulum (ER) and mitochondria, the intracellular transport of proteins, protein repair and degradation (of environmentally damaged proteins), regulatory protein control, and the re-folding of misfolded proteins. The Hsps have been generally classified into several classes depending on their molecular weights, see Table 1.

Table 1*
Name
Localization
Function

Hsp104

Cytoplasm

Releases proteins from aggregates
Hsp90a and ß Cytoplasm Prevents protein aggregation, enables protein stabilization and trafficking, facilitates activation of numerous regulated proteins
Grp94 Endoplasmic reticulum Quality control of protein processing in the endoplasmic reticulum
TRAP/Hsp25 Mitochondria Unclear
Hsp70/Hsc70 Cytoplasm Prevents protein aggregation, aids protein folding
Grp78/Bip Endoplasmic reticulum Protein import and folding in the endoplasmic reticulum
Hsp60/Chaperonins Cytoplasm and mitochondria Prevents protein aggregation, aids protein folding
Hsp47 Endoplasmic reticulum Facilitates the folding and assembly of procollagen molecules, retaining unfolded molecules within the ER, and assisting the transport of correctly folded molecules from the ER to the Golgi apparatus.
Hsp40/HDJ2 Cytoplasm Helps protein folding as a co-chaperone of hsp70
Hsp32 (HO-1; small Hsps) Endoplasmic reticulum, plasma membrane and mitochondria Catalyzes first step of heme degradation to bilirubin, which has antioxidant properties.
Hsp27/25 (small Hsps) Endoplasmic reticulum Prevents protein aggregation, may have role in cell growth and differentiation
Alpha B crystalline (small Hsps) Cytoplasm Major eye lens protein. Alpha B-crystallin inhibits TRAIL induced apoptosis in cancer. It confers a cyto-protective effect by suppressing aggregation of denatured proteins. It is constitutively expressed, often at high levels, in human cancers, including gliomas, breast, prostate and renal cell carcinomas.

*Adapted from Annals in Oncology, 14: 1169-1176, 2003

Hsp90 is one of the most prevalent chaperone proteins present in the cell – it can represent 1-2% of unstressed cell’s protein and as much as 6% in the stressed cell. It has the ability to provide multi-component complexes which have been shown to include p60/Hop, p50Cdc37, Hsp40/HDJ2, p23, Hsp70 and one of a number of immunophilins (such as FKBP51 and FKBP52). Hsp90 itself is present in two forms, Hsp90a and ß. Both proteins are highly related and appear to have identical activities, however, the former is inducible whereas the latter is constitutively expressed. Hsp90 is also a phospho-protein – and has two or three bound phosphate molecules per monomer and exists as a homodimer. One of the clear distinctions that have made it a potential drug target are the fact that a significant amount of its client proteins are protein kinases. These client proteins include ErbB2/Her-2, EGFR, Hif1a, c-Met, Akt/PKB, Raf-1, Cdk-1 and 4, Aurora B, Ask1, CHK1, CKII as well as mutant p53. Furthermore, due to the nature of the interactive and complex network that is associated with regulating cell proliferation and cell death, the approach of identifying one specific (drug) target and blocking or activating it can result in the cell simply altering it’s regulation in order to maintain the phenotype. The wide amount of Hsp90 client proteins and the fact that many of them are directly involved in regulatory (signaling and phosphorylation) processes have allowed researchers to take a wider target approach to shutting down activities associated with cancers and stepping around the redundancies of the multiple signaling routes.

Hsp90 has been widely studied in relation to steroid receptors, despite the first recognized substrate being discovered to be pp60v-sr. These studies have elucidated that the receptors must be bound to Hsp90 to have a high binding affinity for steroids. The Hsp90 assembly also showed the importance of the presence of p23 and Hop, working together with Hsp70 and Hsp90 as a multi-protein machine. Together with Hsp40, these five proteins work together to produce receptor-Hsp90 heterocomplexes with steroid-binding activity. Mechanistic studies have indicated the steps involved in the assembly, starting with two sequential ATP-dependent events involving first hsp70 and then hsp90. Interestingly, since the chaperone machinery reveals a hydrophobic steroid-binding cleft to access the ligand, the action of Hsp90 as part of the multi-protein machinery is quite different from that of hsp90 acting alone in vitro to promote reactivation of partially denatured enzymes. The three hsp90-binding tetratricopeptide repeat (TPR) domain immunophilins - FKBP52, FKBP51, and CyP-40- were discovered as components of steroid receptor-hsp90 heterocomplexes.

Steroid-mediated glucocorticoid receptor translocation from the cytoplasm to the nucleus has led to the discovery that the TPR domain immunophilins link Hsp90 to a dynein motor protein. The mechanistic conclusions derived from elucidation of how the Hsp90 machinery works with the steroid receptor appears to provide a broad set of principles of how Hsp90 works, which would be in contrast to other cell stress protein chaperone studies. The latter would indicate that in order to be a substrate for Hsp90 or Hsp70 the presence (some degree) of unfolded protein would be required – however there have been no indications for the steroid receptor studies that receptors are in any way denatured. When Hsp90 and Hsp70 act together a highly focal site of attack is located on the glucocorticoid receptor that is situated on the surface of the ligand-binding domain at the opening of the hydrophobic steroid-binding cleft. However, whether or not Hsp90 has the general ability to recognize cleft openings on other signaling proteins is unclear, but due to the fact that they are present on almost all protein as a topological feature it is possible that the Hsp90 and Hsp70 complex recognizes these native rather than denatured conformations.

Currently, high interest has been manifest in benzoquinone ansamycin antibiotics (BA), which include herbimycin, geldanamycin and 17-allylamino-17-demethoxygeldanamycin (17-AAG), a drug class capable of affecting multiple targets in tumor cell pathways by binding to Hsp90. 17-AAG has also been modified to make 17- dimethylaminoethylamino - 7 - demethoxygeldanamycin (17-DMAG) to improve drug half-life and water solubility. These drugs bind Hsp90 at a conserved 25kD N-terminal domain which is responsible for ATP binding, hence disrupting the Hsp90 chaperone complex. Other inhibitors include radicicol, the chemotherapeutic agent cisplatin, taxol, as well as the antibactericide novobiocin. Cisplatin binds to a novel nucleotide-binding site of Hsp90 at its C-terminus, while novobiocin binds to several domains of Hsp90. This leads directly to the disruption of the Hsp90 activity and the chaperone complex functions, resulting in depletion of the oncogenic client proteins.

StressMarq Biosciences Inc has endeavored to provide a full series of unparalleled hsp90 reagents to allow further study of the Hsp90 chaperone system in vivo and in vitro. Although not exhaustive, the following table shows the unparalleled position StressMarq has created amongst suppliers.

Supplier:
StressMarq Biosciences Inc
StressMarq Biosciences Inc.
Product Number
Competitor A
Competitor B

Antibodies

Hsp90a Yes SMC-108, SMC-112, SMC-137, SMC-147 Yes Yes
Hsp90ß Yes SMC-107, SMC-136, SPC-177 Yes Yes
Hsp90 total Yes SMC-112, SMC-149, SPC-104 Yes Yes
Broadest species cross-reactivity, including insect cell Hsp90 Yes SMC-112 No No
Hsp90 complex isolation Yes SMC-109 No No
Proteins
Hsp90a – Geldanamycin binding certified* Yes SPR-101 No No
Hsp90ß Geldanamycin binding certified* Yes SPR-102 No No
Hsp90ß – Endotoxin-free Yes SPR-102 No No
Hsp70 Endotoxin-free Yes SPR-117 No No
IHC Kits
Hsp90a Yes SKT-243 No No
Hsp90ß Yes SKT-244 No No
Hsp90 total Yes SKT-245 No No
Inhibitors
17-AAG Yes SIH-100A Yes No
Geldanamycin Yes SIH-111A, B Yes No
Biotin- Geldanamycin Yes SIH-112A No No
FITC- Geldanamycin Yes SIH-113A No No
17-DMAG Yes SIH-114A No No
17-GMB-APA-GA Yes SIH-115A No No
Herbimycin A Yes SIH-116A, B No No
Radicicol Yes SIH-117A No No
* See Figure 1 - Click here

 

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Events

Tradeshows

Meet MJSBioLynx at the following events:

Tradeshow Location Date
University of Alberta Supply Management Show
Our Sister Company, Chromatographic Specialties Inc. will also be in attendance.
University of Alberta May 7, 2009

Labfest 2009
Seminar: Nucleic Acid Purification: Demistifying the Black Box

Nearly every molecular biology lab in the country uses nucleic acid purification kits. Understanding the different technologies behind nucleic acid purification will give you the power and the tools necessary to use these products to their full potential. Presented by Dr. Björn Henze, Macherey-Nagel

University of Toronto Residence May 26 and 27, 2009

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