e-Lynx - September 2008

Dear Researcher,

We are pleased to present the August e-Lynx, a newsletter devoted to keeping our customers up-to -date on new technologies, our new products, suppliers, activities and promotions.

New Suppliers


Bringing Science to the Surface™

Platypus Technologies, LLC develops innovative products for the analytical and life sciences based upon the application of nanotechnology. Utilizing recent advances in nanoscale and material science, the company provides advanced tools for use in proteomics, cell-based studies, and environmental monitoring.

Platypus Technologies’ products include the ORIS™ Cell Migration Assay and the ORIS™ Cell Invasion Assay. These assays use an industry standard, 96-well microplate populated with unique Oris™ Cell Seeding Stoppers in each well. These patent pending, stoppers allow researchers to dispense cells into each well and create an exclusion zone with the tip of the stopper. After the cells adhere to the well surface, the stoppers are removed creating a 2 mm diameter circle into which the cells can then migrate. Researchers can then take real time photos (digital image) of the cells migrating into this central detection zone and quantify the results using microplate readers all in the same well.

Platypus Technologies also offers gold-coated glass slides/mica/silicon wafers/coverslips. These products can be used in biosensor applications such as cell culture, microarrays, surface plasmon reflectometry and scanning probe microscopy.

Visit www.platypustech.com for more information about their products.

New Products

Active Motif - ChIP-IT™ Express HT
maximize your efforts with real high-throughput ChIP

ChIP-IT™ Express HT allows you to perform chromatin IP in a fast, reproducible high-throughput format. It combines the efficiency of the groundbreaking magnetic bead-based ChIP-IT™ Express Kit with a 96-well plate format, enabling the rapid and efficient processing of a large number of ChIP reactions.

  • Faster plate-based protocol
  • Process up to 96 ChIP reactions simultaneously
  • Works with chromatin preparation kits for sonication or enzymatic shearing
  • Compatible with ChIP-chip or ChIP-seq methodologies


Figure 1: Schematic of chromatin immunoprecipitation using ChIP-IT Express HT.

Product Number Description Pkg Size
AM53018 ChIP-IT™ Express HT 96 rxns
AM90096 MAG-96 Magnetic stand Each

Click here for Promotional Offer

Active Motif - Recombinant Methylated Histones
Histones with Site- and Degree-specific Methylated Lysines

Histones with specific methylation states are an essential tool for investigating which methylation patterns are key to complex functional questions about chromatin-associated proteins, nucleosome remodeling, transcriptional regulation, replication and DNA repair.

Product Number Description Pkg Size
AM31207 Recombinant Histone H3 (C110A) 50 µg
AM31208 Recombinant Histone H3 monomethyl Lys4 50 µg
AM31209 Recombinant Histone H3 dimethyl Lys4 50 µg
AM31210 Recombinant Histone H3 trimethyl Lys4 50 µg
AM31211 Recombinant Histone H3 monomethyl Lys9 50 µg
AM31212 Recombinant Histone H3 dimethyl Lys9 50 µg
AM31213 Recombinant Histone H3 trimethyl Lys9 50 µg
AM31214 Recombinant Histone H3 monomethyl Lys27 50 µg
AM31215 Recombinant Histone H3 dimethyl Lys27 50 µg
AM31216 Recombinant Histone H3 trimethyl Lys27 50 µg

 

Trevigen - Cultrex® Laminin I (Mouse) PathClear®

Laminin is an extracellular matrix protein which contains a number of functional domains that allow it to assemble into sheets. Trevigen's mouse laminin is purified from EHS sarcoma.

The PathClear® designation means that in addition to standard sterility, endotoxin and MAP testing, the Laminin is tested by PCR and is clear of 31 pathogens and viruses, including LDEV. Each lot is rigorously qualified in biological performance assays.

Product Number Description Pkg Size
TV340001002 Cultrex® Laminin I (Mouse) PathClear® 1mg

Trevigen - Superoxide Dismutase Assay Kit Cuvette Format

  • Assay is ideal for assaying SODs in mammalian tissue and cell lysates in a cuvette format
  • The assay is performed in as little as 10 minutes
  • Suitable for the assay of isozymes SOD1 (cytosolic Cu/Zn-SOD), SOD2 (mitochondrial Mn-SOD), and SOD3 (extracellular Cu/Zn-SOD)
  • Applications: Calculating SOD activity by measuring the reduction of WST-1.
Product Number Description Pkg Size
TV7502100K Superoxide Dismutase Assay Kit - Cuvette Format 100 tests

Pickering Laboratories - Post-Column Derivatization

Our sister company, Chromatographic Specialties Inc., now offers products from Pickering Laboratories. Pioneers in post-column derivatization technology and chemistry, Pickering Laboratories have been developing applications to solve the analysis requirements of government and private labs for over 20 years. They are leaders in the field of HPLC and post-column derivatization technology, having developed instruments and chemistry to solve analysis challenges in the field of environmental and clinical testing. Pickering Laboratories are currently focusing on the Clinical and Pharmaceutical laboratory analyses of Amino Acids. They also offer tools for use in sample preparation through to detection for Aflatoxin and Ochratoxin analysis.

Click here to visit the Pickering Laboratories website or contact the Chromatographic Specialties Inc. Technical Support Team for more information.

New Literature

Trevigen - Product Focus Brochure 2008-09

This new brochure offers information on products including Basement Membrane Extracts, the DIVAA™ Directed in vivo Angiogenesis Assays, CometAssay™, Cell Invasion/Migration Assays, TACS™ in situ Apoptosis Detection Kits and more.

 

Promotions

Dualsystems - 5% OFF All Yeast Based Screening Services

Dualsystems Biotech is the market leader for customized yeast-based screening methods. They are specialized in the discovery of protein-protein interactions.

 

Click here for promotion details

 

USB - Save 20% OFF USB Molecular Biology Ladders


For a limited time, save 20% OFF USB's Ladders for DNA, RNA and Proteins.

Click here for promotion details.

USB - Spend $150 on USB Biochemicals and
we'll send you the USB fitness pack Free!

USB provides biochemicals that deliver reliable and consistent results. USB biochemicals and Ultrapure brand products meet the highest industry standards for quality. They are available in a variety of grades such as ACS Reagent Grade, CP Grade (Chemically Pure), USP Grade (USBioAnalyzed) and Molecular Biology Grade.

Don't forget about their line of convenience reagents. USB offers an extensive selection of Ultrapure biochemical reagents in premixed, ready-to-use formats for convenience in any lab.

Now's a great time to step forward and purchase USB Biochemicals and convenience reagents. When you spend $150 or more, we'll send you a USB water bottle and pedometer to track your own fitness results.

Click here for promotion details.

Active Motif - Order any TransAM™ ELISA Kit and Receive a FREE Nuclear Extract Kit

TransAM™ Kits are DNA-binding ELISAs that facilitate the study of transcription factor activation in mammalian tissue and cell culture extracts. TransAM is rapid, non-radioactive, highly specific and 100-fold more sensitive than gel shift assays. Kits are available for analysis of over 40 transcription factors.

Click here for promotion details

 

Active Motif - Order ChIP-IT™ Express HT and Receive a FREE MAG-96 Magnetic Stand

ChIP-IT™ Express HT allows you to perform chromatin IP in a fast, reproducible high-throughput format. It combines the efficiency of the groundbreaking magnetic bead-based ChIP-IT™ Express Kit with a 96-well plate format, enabling the rapid and efficient processing of a large number of ChIP reactions.

Click here for promotion details

Active Motif - Order 3 Antibodies, Get a 4th FREE!

Active Motif offers a broad line of highly-characterized antibodies directed against a variety of histones, histone modifications, transcription factors and cell signaling-related proteins. They are ideal for performing Western blots, ELISAs, ChIP, EMSA and immunocytochemistry.

Click here for promotion details

 

Simport - 25% OFF LockMailer™ Microscope Slide Jar

Get a 25% Discount on Simports new LockMailer™ Jars,
tamperproof multi purpose containers for mailing, staining or storing microscope slides.

Click here for promotion details

 

 

Assay Designs - Buy 3, Get 1 Free - Antibody and Protein Promotion

Offer extended until December 31st, 2008

Fall into savings with this buy 3, get 1 free promotion on Assay Designs top selling antibodies and proteins. All you need to do is select at least 4 Assay Designs™ antibodies or proteins from the list below and you will receive the lowest priced product free of charge.

Over 110 antibodies and proteins to choose from, including many Stressgen® brand products
Diverse set of research areas including heat shock, cell signaling, oxidative stress, and inflammation
Superb performance documented in thousands of peer-reviewed publications

Click here for promotion details

Technical Report

Reliable extraction yielding highly pure RNA from a variety of sample materials
by Macherey-Nagel

MACHEREY-NAGEL, a leader in purification kit innovation and manufacture, has answered the need for reliable RNA purification out of various starting materials.

NucleoSpin® RNA II is suited for fast and easy extraction of highly pure RNA out of cultured cells and various tissues like e.g. paraffin embedded tissue, biological fluids, bacterial cells (Gram-negative and Gram-positive).

High yields up to 70 µg ready-to-use RNA can be obtained.

RNA purified with NucleoSpin® RNA II is suitable for applications like real-time PCR, RT-PCR, Northern blotting, primer extension, array technology and RNase protection assays.

Filters and quantitative DNA removal for best possible results

NucleoSpin® Filters (shredders) are part of the kit and cause an efficient homogenization and reduction of viscosity.

Using the rDNase included in NucleoSpin® RNA II the resulting RNA is without detectable genomic DNA.
In fig. 1 gel-electrophoresis results of RNA purified from five million HeLa cells are shown. On a denaturating formaldehyde gel (1A) the RNA shows a band pattern typical for HeLa cells, consisting of 18S rRNA, 28S rRNA and a nuclear precursor RNA (n.p. RNA) which is sometimes misleadingly interpreted as genomic DNA. The high molecular weight band indicates highest RNA quality as precursor RNA is very prone to degradation.
Fig. 1b shows the same RNA sample in a TAE gel which stains DNA considerably stronger than denaturating formaldehyde gels. The RNA fraction has been treated with RNAse in order to get a clear view on possible DNA contamination in the RNA elution fraction, which however cannot be detected.

Fig. 1: a) On the denaturating formaldehyde agarose gel the RNA eluate shows not only the 28S and 18S rRNA but as well the nuclear precursor RNA (n.p. RNA). b) Using non denaturating conditions and having digested the RNA only the degraded RNA can be detected but no chromosomal DNA.

Accurate highly sensitive results

NucleoSpin® RNA II allows the purification of highly pure RNA suitable for accurate results in demanding downstream application, like RT-PCR.


Fig. 2: Agarose gel of RT-PCR products using different amounts of HeLa cells

In Fig. 2 a RT-PCR of total RNA isolated with the NucleoSpin® RNA II standard protocol is shown starting with 105, 104, 103, 330, 100, 33,10, 3 and 0 HeLa cells. The RT-PCR was done using 3 µl of total RNA each (elution volume 40 µl) and ß-actin primers. The specific RT-PCR product is 626 bp of size. The results show that the recovery from the NucleoSpin® RNA II is as efficient that RT-PCR is possible with only RNA from 10 HeLa cells.

Outperforming the competitors kits

Fig. 3 shows purified total RNA from 106 HeLa cells in comparison to competitor Q. PCR reactions were performed for 30 cycles using different sensitive gene-specific primers. An aliquot of the PCR reaction was analyzed using a 1% TAE agarose gel.

Lane 1 - 4 AFR3 Gene 1069 bp single copy target
Lane 6 - 9 Actin 3-5 838 bp multi copy target
Lane 11- 14 Gamma actin 451 bp multi copy target
Lane 5 / 10 blank    
M Marker 100 bp DNA ladder, MBI-Fermentas


 


Fig. 3: Agarose gel of PCR products after RNA extraction using the NucleoSpin® RNA II (MN) and a competitor product (Q) for the detection of chromosomal DNA contamination

Even when small targets are amplified no DNA contamination can be detected using the MACHEREY-NAGEL kit whereas the kit from competitor Q shows obvious contamination resulting in false positives.

NucleoSpin® RNA II provides you best results in your sensitive downstream applications.

NucleoSpin® RNA II offers a full solution including the DNase and filters for optimal results.

Technology Silica-membrane technology
Format Mini spin columns
Sample Material < 5 x 106 cultured cells
< 109 bacterial cells, up to 108 yeast cells
< 30 mg tissue
Fragment Size > 200 b
Typical Yield 14 µg from 106 HeLa cells
70 µg from 109 bacterial cells
A260/280 1.9-2.1
Typical RIN (RNA Integrity Number) > 9
Elution Volume 40-100 µl
Preparation Time 30 min/6 preps
Binding Capacity 100 µg

 

 

Tradeshows and Events

Tradeshow Location Date
RiboClub Hôtel Chéribourg
Orford, Qc
September 22 and 23, 2008


 

Tech Support Link
 
1-888-593-5969
P.O. Bag 1150, 300 Laurier Blvd., Brockville, Ontario, Canada, K6V 5W1, Fax: (613) 342-1341

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